IL_7ASP_066

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GGGC*GCGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASP_066 not in the Motif Atlas

Geometric match to IL_5TBW_100

Geometric discrepancy: 0.314

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7ASP|1|Y|G|1243
7ASP|1|Y|G|1244
7ASP|1|Y|G|1245
7ASP|1|Y|C|1246
*
7ASP|1|Y|G|1276
7ASP|1|Y|C|1277
7ASP|1|Y|G|1278
7ASP|1|Y|C|1279

Current chains

Chain Y

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain J

50S ribosomal protein L15