IL_7ASP_067

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7ASP|1|Y|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASP_067 not in the Motif Atlas

Geometric match to IL_4V9F_048

Geometric discrepancy: 0.1234

The information below is about IL_4V9F_048

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

7ASP|1|Y|C|1246
7ASP|1|Y|G|1247
7ASP|1|Y|U|1248
7ASP|1|Y|U|1249
7ASP|1|Y|G|1250
7ASP|1|Y|A|1251
7ASP|1|Y|A|1252
7ASP|1|Y|G|1253
*
7ASP|1|Y|U|1272
7ASP|1|Y|G|1273
7ASP|1|Y|G|1274
7ASP|1|Y|A|1275
7ASP|1|Y|G|1276

Current chains

Chain Y

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L20