IL_7ASP_072

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASP_072 not in the Motif Atlas

Homologous match to IL_7A0S_049

Geometric discrepancy: 0.3001

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

7ASP|1|Y|U|1394
7ASP|1|Y|G|1395
7ASP|1|Y|A|1396
7ASP|1|Y|G|1397
7ASP|1|Y|G|1398
*
7ASP|1|Y|C|1407
7ASP|1|Y|G|1408
7ASP|1|Y|U|1409
7ASP|1|Y|A|1410
7ASP|1|Y|G|1411

Current chains

Chain Y

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L34

Chain C

50S ribosomal protein L2