IL_7AZO_032

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_032 not in the Motif Atlas

Homologous match to IL_5J7L_036

Geometric discrepancy: 0.0992

The information below is about IL_5J7L_036

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

7AZO|1|16SA|G|1403
7AZO|1|16SA|G|1404
7AZO|1|16SA|G|1405
7AZO|1|16SA|A|1406
7AZO|1|16SA|G|1407
*
7AZO|1|16SA|U|1433
7AZO|1|16SA|C|1434

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain 23SA

Large subunit ribosomal RNA; LSU rRNA

Chain L2A

50S ribosomal protein L2

Chain S11A

30S ribosomal protein S11