3D structure

PDB id
7AZO (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GGAGUACG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7AZO_034 not in the Motif Atlas
Homologous match to IL_4LFB_034
Geometric discrepancy: 0.078
The information below is about IL_4LFB_034
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_84044.1
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
5

Unit IDs

7AZO|1|16SA|G|1510
7AZO|1|16SA|G|1511
7AZO|1|16SA|A|1512
7AZO|1|16SA|G|1513
7AZO|1|16SA|U|1514
7AZO|1|16SA|A|1515
7AZO|1|16SA|C|1516
7AZO|1|16SA|G|1517
*
7AZO|1|16SA|U|1528
7AZO|1|16SA|G|1529
7AZO|1|16SA|A|1530
7AZO|1|16SA|A|1531
7AZO|1|16SA|A|1532
7AZO|1|16SA|C|1533

Current chains

Chain 16SA
16S rRNA

Nearby chains

Chain S12A
30S ribosomal protein S12
Chain S17A
30S ribosomal protein S17

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2109 s