IL_7AZO_041

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCU*G(2MG)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_041 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.1482

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7AZO|1|16SA|G|1678
7AZO|1|16SA|C|1679
7AZO|1|16SA|U|1680
*
7AZO|1|16SA|G|1833
7AZO|1|16SA|2MG|1834
7AZO|1|16SA|C|1835

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain ASIA

Transfer RNA; tRNA

Chain S14A

30S ribosomal protein S14 type Z

Chain S3A

30S ribosomal protein S3