IL_7AZO_053

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

7AZO|1|16SA|A|2126

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_053 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2151

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

7AZO|1|16SA|C|2027
7AZO|1|16SA|5MC|2028
7AZO|1|16SA|G|2029
*
7AZO|1|16SA|C|2124
7AZO|1|16SA|A|2125
7AZO|1|16SA|A|2126
7AZO|1|16SA|G|2127

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain MRNA

RNA (30-MER)

Chain PSIA

Transfer RNA; tRNA