IL_7AZO_079

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_079 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.1034

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

7AZO|1|16SB|G|1090
7AZO|1|16SB|A|1091
7AZO|1|16SB|A|1092
7AZO|1|16SB|A|1093
7AZO|1|16SB|C|1094
7AZO|1|16SB|C|1095
*
7AZO|1|16SB|G|1107
7AZO|1|16SB|A|1108
7AZO|1|16SB|C|1109
7AZO|1|16SB|U|1110
7AZO|1|16SB|G|1111
7AZO|1|16SB|A|1112
7AZO|1|16SB|C|1113

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S16B

30S ribosomal protein S16