IL_7AZO_080

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_080 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.0761

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

7AZO|1|16SB|C|1133
7AZO|1|16SB|G|1134
7AZO|1|16SB|G|1135
7AZO|1|16SB|C|1136
7AZO|1|16SB|C|1137
7AZO|1|16SB|A|1138
7AZO|1|16SB|A|1139
7AZO|1|16SB|C|1140
*
7AZO|1|16SB|G|1169
7AZO|1|16SB|G|1170

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S12B

30S ribosomal protein S12

Chain S4B

30S ribosomal protein S4

Chain S5B

30S ribosomal protein S5