IL_7AZO_082

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

7AZO|1|16SB|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_082 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.0841

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

7AZO|1|16SB|C|1198
7AZO|1|16SB|G|1199
7AZO|1|16SB|U|1200
7AZO|1|16SB|A|1201
7AZO|1|16SB|A|1202
7AZO|1|16SB|A|1203
7AZO|1|16SB|G|1204
*
7AZO|1|16SB|C|1503
7AZO|1|16SB|G|1504

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S12B

30S ribosomal protein S12

Chain S17B

30S ribosomal protein S17

Chain S5B

30S ribosomal protein S5