IL_7AZO_098

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_098 not in the Motif Atlas

Homologous match to IL_4LFB_038

Geometric discrepancy: 0.14

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

7AZO|1|16SB|G|1576
7AZO|1|16SB|G|1577
*
7AZO|1|16SB|C|1853
7AZO|1|16SB|A|1854
7AZO|1|16SB|C|1855

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain ASIB

Transfer RNA; tRNA

Chain PSIB

Transfer RNA; tRNA

Chain S13B

30S ribosomal protein S13

Chain S19B

30S ribosomal protein S19