IL_7AZO_104

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

7AZO|1|16SB|C|1827, 7AZO|1|16SB|A|1828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_104 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.1062

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

7AZO|1|16SB|G|1685
7AZO|1|16SB|G|1686
*
7AZO|1|16SB|U|1826
7AZO|1|16SB|C|1827
7AZO|1|16SB|A|1828
7AZO|1|16SB|G|1829
7AZO|1|16SB|C|1830

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S10B

30S ribosomal protein S10

Chain S14B

30S ribosomal protein S14 type Z

Chain S3B

30S ribosomal protein S3