IL_7AZO_107

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUGCC*GGCACUC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_107 not in the Motif Atlas

Geometric match to IL_4LFB_048

Geometric discrepancy: 0.2485

The information below is about IL_4LFB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89862.1

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7AZO|1|16SB|G|1752
7AZO|1|16SB|U|1753
7AZO|1|16SB|U|1754
7AZO|1|16SB|G|1755
7AZO|1|16SB|C|1756
7AZO|1|16SB|C|1757
*
7AZO|1|16SB|G|1771
7AZO|1|16SB|G|1772
7AZO|1|16SB|C|1773
7AZO|1|16SB|A|1774
7AZO|1|16SB|C|1775
7AZO|1|16SB|U|1776
7AZO|1|16SB|C|1777

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S10B

30S ribosomal protein S10

Chain S9B

30S ribosomal protein S9