IL_7AZO_112

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_112 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1377

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7AZO|1|16SB|C|1930
7AZO|1|16SB|G|1931
7AZO|1|16SB|G|1932
7AZO|1|16SB|A|1933
7AZO|1|16SB|U|1934
7AZO|1|16SB|U|1935
*
7AZO|1|16SB|A|1956
7AZO|1|16SB|U|1957
7AZO|1|16SB|G|1958
7AZO|1|16SB|A|1959
7AZO|1|16SB|A|1960
7AZO|1|16SB|G|1961

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S13B

30S ribosomal protein S13

Chain THXB

30S ribosomal protein Thx