IL_7AZO_119

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_119 not in the Motif Atlas

Geometric match to IL_4LFB_063

Geometric discrepancy: 0.0897

The information below is about IL_4LFB_063

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7AZO|1|16SB|G|2063
7AZO|1|16SB|U|2064
7AZO|1|16SB|C|2065
*
7AZO|1|16SB|G|2087
7AZO|1|16SB|C|2088
7AZO|1|16SB|C|2089

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain 23SB

Large subunit ribosomal RNA; LSU rRNA

Chain L19B

50S ribosomal protein L19

Chain S20B

30S ribosomal protein S20