IL_7AZO_134

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

7AZO|1|23SA|U|531, 7AZO|1|23SA|G|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_134 not in the Motif Atlas

Geometric match to IL_7RQB_014

Geometric discrepancy: 0.062

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

7AZO|1|23SA|G|509
7AZO|1|23SA|A|510
7AZO|1|23SA|A|511
7AZO|1|23SA|C|512
*
7AZO|1|23SA|G|523
7AZO|1|23SA|A|524
7AZO|1|23SA|G|525
7AZO|1|23SA|U|526
7AZO|1|23SA|G|527
7AZO|1|23SA|A|528
7AZO|1|23SA|A|529
7AZO|1|23SA|A|530
7AZO|1|23SA|U|531
7AZO|1|23SA|A|532
7AZO|1|23SA|G|533
7AZO|1|23SA|A|534
7AZO|1|23SA|G|535
7AZO|1|23SA|C|536

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L22A

50S ribosomal protein L22

Chain L24A

50S ribosomal protein L24