IL_7AZO_136

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_136 not in the Motif Atlas

Geometric match to IL_4WF9_019

Geometric discrepancy: 0.095

The information below is about IL_4WF9_019

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7AZO|1|23SA|U|631
7AZO|1|23SA|U|632
7AZO|1|23SA|A|633
7AZO|1|23SA|A|634
7AZO|1|23SA|G|635
*
7AZO|1|23SA|C|645
7AZO|1|23SA|G|646
7AZO|1|23SA|G|647
7AZO|1|23SA|A|648
7AZO|1|23SA|G|649

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L15A

50S ribosomal protein L15

Chain L4A

50S ribosomal protein L4