IL_7AZO_161

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

7AZO|1|23SA|A|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_161 not in the Motif Atlas

Geometric match to IL_6CZR_136

Geometric discrepancy: 0.39

The information below is about IL_6CZR_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05564.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

7AZO|1|23SA|G|1135
7AZO|1|23SA|A|1136
7AZO|1|23SA|G|1137
7AZO|1|23SA|U|1138
7AZO|1|23SA|G|1139
*
7AZO|1|23SA|C|1148
7AZO|1|23SA|U|1149
7AZO|1|23SA|C|1150

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L6A

50S ribosomal protein L6