IL_7AZO_167

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_167 not in the Motif Atlas

Geometric match to IL_7RQB_050

Geometric discrepancy: 0.083

The information below is about IL_7RQB_050

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

7AZO|1|23SA|G|1359
7AZO|1|23SA|G|1360
7AZO|1|23SA|U|1361
7AZO|1|23SA|U|1362
*
7AZO|1|23SA|A|1652
7AZO|1|23SA|C|1653

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L23A

50S ribosomal protein L23

Chain L34A

50S ribosomal protein L34