IL_7AZO_168

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

7AZO|1|23SA|G|1381

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_168 not in the Motif Atlas

Geometric match to IL_7RQB_051

Geometric discrepancy: 0.0885

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

7AZO|1|23SA|G|1368
7AZO|1|23SA|C|1369
7AZO|1|23SA|A|1370
7AZO|1|23SA|A|1371
7AZO|1|23SA|U|1372
*
7AZO|1|23SA|A|1380
7AZO|1|23SA|G|1381
7AZO|1|23SA|C|1382

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L22A

50S ribosomal protein L22

Chain L23A

50S ribosomal protein L23