IL_7AZO_188

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

7AZO|1|23SA|C|1872

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_188 not in the Motif Atlas

Geometric match to IL_7RQB_071

Geometric discrepancy: 0.0897

The information below is about IL_7RQB_071

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_88739.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

7AZO|1|23SA|C|1871
7AZO|1|23SA|C|1872
7AZO|1|23SA|G|1873
7AZO|1|23SA|G|1874
*
7AZO|1|23SA|C|1927
7AZO|1|23SA|G|1928

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain 16SA

Small subunit ribosomal RNA; SSU rRNA

Chain L2A

50S ribosomal protein L2