IL_7AZO_205

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAG*CGGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_205 not in the Motif Atlas

Geometric match to IL_7RQB_088

Geometric discrepancy: 0.2369

The information below is about IL_7RQB_088

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7AZO|1|23SA|C|2312
7AZO|1|23SA|A|2313
7AZO|1|23SA|G|2314
*
7AZO|1|23SA|C|2332
7AZO|1|23SA|G|2333
7AZO|1|23SA|G|2334
7AZO|1|23SA|A|2335
7AZO|1|23SA|G|2336

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain 5SA

5S ribosomal RNA; 5S rRNA

Chain L18A

50S ribosomal protein L18

Chain L27A

50S ribosomal protein L27

Chain L5A

50S ribosomal protein L5