IL_7AZO_254

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_254 not in the Motif Atlas

Geometric match to IL_4V9F_034

Geometric discrepancy: 0.1126

The information below is about IL_4V9F_034

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

7AZO|1|23SB|G|911
7AZO|1|23SB|A|912
*
7AZO|1|23SB|U|961
7AZO|1|23SB|C|962
7AZO|1|23SB|C|963

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain 5SB

5S ribosomal RNA; 5S rRNA

Chain L16B

50S ribosomal protein L16

Chain L25B

50S ribosomal protein L25