IL_7AZO_259

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

7AZO|1|23SB|C|1043

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_259 not in the Motif Atlas

Geometric match to IL_7RQB_035

Geometric discrepancy: 0.1487

The information below is about IL_7RQB_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

7AZO|1|23SB|C|1042
7AZO|1|23SB|C|1043
7AZO|1|23SB|A|1044
*
7AZO|1|23SB|U|1208
7AZO|1|23SB|G|1209

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L13B

50S ribosomal protein L13

Chain L20B

50S ribosomal protein L20

Chain L21B

50S ribosomal protein L21

Chain L30B

50S ribosomal protein L30