IL_7AZO_289

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

7AZO|1|23SB|G|2017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_289 not in the Motif Atlas

Geometric match to IL_7RQB_067

Geometric discrepancy: 0.0668

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

7AZO|1|23SB|A|1719
7AZO|1|23SB|C|1720
7AZO|1|23SB|U|1721
7AZO|1|23SB|C|1722
7AZO|1|23SB|U|1723
7AZO|1|23SB|G|1724
*
7AZO|1|23SB|C|2015
7AZO|1|23SB|U|2016
7AZO|1|23SB|G|2017
7AZO|1|23SB|U|2018

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L14B

50S ribosomal protein L14

Chain L3B

50S ribosomal protein L3