IL_7AZO_295

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

7AZO|1|23SB|A|1881

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_295 not in the Motif Atlas

Geometric match to IL_7RQB_073

Geometric discrepancy: 0.1038

The information below is about IL_7RQB_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_88739.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

7AZO|1|23SB|G|1880
7AZO|1|23SB|A|1881
7AZO|1|23SB|A|1882
7AZO|1|23SB|G|1883
*
7AZO|1|23SB|C|1918
7AZO|1|23SB|C|1919

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain 16SB

Small subunit ribosomal RNA; SSU rRNA

Chain ESIB

Transfer RNA; tRNA

Chain L2B

50S ribosomal protein L2