IL_7AZO_296

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_296 not in the Motif Atlas

Geometric match to IL_7RQB_074

Geometric discrepancy: 0.1683

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

7AZO|1|23SB|U|1885
7AZO|1|23SB|C|1886
7AZO|1|23SB|A|1887
7AZO|1|23SB|A|1888
7AZO|1|23SB|G|1889
*
7AZO|1|23SB|C|1912
7AZO|1|23SB|G|1913
7AZO|1|23SB|A|1914
7AZO|1|23SB|A|1915
7AZO|1|23SB|G|1916

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain ESIB

Transfer RNA; tRNA

Chain L2B

50S ribosomal protein L2