IL_7AZO_298

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_298 not in the Motif Atlas

Geometric match to IL_5J7L_318

Geometric discrepancy: 0.0791

The information below is about IL_5J7L_318

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

7AZO|1|23SB|G|1958
7AZO|1|23SB|C|1959
*
7AZO|1|23SB|G|1989
7AZO|1|23SB|C|1990
7AZO|1|23SB|A|1991
7AZO|1|23SB|C|1992

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain 16SB

Small subunit ribosomal RNA; SSU rRNA

Chain PSIB

Transfer RNA; tRNA