IL_7AZO_332

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_332 not in the Motif Atlas

Geometric match to IL_7RQB_110

Geometric discrepancy: 0.0973

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

7AZO|1|23SB|U|2860
7AZO|1|23SB|G|2861
7AZO|1|23SB|U|2862
7AZO|1|23SB|A|2863
7AZO|1|23SB|A|2864
7AZO|1|23SB|G|2865
*
7AZO|1|23SB|U|2878
7AZO|1|23SB|U|2879
7AZO|1|23SB|G|2880
7AZO|1|23SB|A|2881
7AZO|1|23SB|G|2882

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L17B

50S ribosomal protein L17

Chain L19B

50S ribosomal protein L19