IL_7AZO_375

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

7AZO|1|16SA|U|813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_375 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.1536

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

7AZO|1|16SA|G|788
7AZO|1|16SA|A|789
7AZO|1|16SA|C|790
7AZO|1|16SA|A|791
7AZO|1|16SA|A|792
7AZO|1|16SA|C|793
*
7AZO|1|16SA|G|808
7AZO|1|16SA|C|809
7AZO|1|16SA|U|810
7AZO|1|16SA|A|811
7AZO|1|16SA|A|812
7AZO|1|16SA|U|813
7AZO|1|16SA|C|814

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain S20A

30S ribosomal protein S20