IL_7AZS_021

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

7AZS|1|16SA|A|1161, 7AZS|1|16SA|U|1163, 7AZS|1|16SA|A|1164

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_021 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.274

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7AZS|1|16SA|G|1144
7AZS|1|16SA|PSU|1145
7AZS|1|16SA|G|1146
7AZS|1|16SA|C|1147
7AZS|1|16SA|C|1148
7AZS|1|16SA|A|1149
7AZS|1|16SA|G|1150
*
7AZS|1|16SA|C|1157
7AZS|1|16SA|G|1158
7AZS|1|16SA|G|1159
7AZS|1|16SA|U|1160
7AZS|1|16SA|A|1161
7AZS|1|16SA|A|1162
7AZS|1|16SA|U|1163
7AZS|1|16SA|A|1164
7AZS|1|16SA|C|1165

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain ASIA

Transfer RNA; tRNA

Chain MRNA

mRNA

Chain S12A

30S ribosomal protein S12

Chain S3A

30S ribosomal protein S3

Chain S4A

30S ribosomal protein S4