IL_7AZS_071

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

7AZS|1|16SB|U|885, 7AZS|1|16SB|C|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_071 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0958

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

7AZS|1|16SB|C|883
7AZS|1|16SB|A|884
7AZS|1|16SB|U|885
7AZS|1|16SB|C|886
7AZS|1|16SB|A|887
7AZS|1|16SB|G|888
*
7AZS|1|16SB|C|918
7AZS|1|16SB|G|919
7AZS|1|16SB|A|920
7AZS|1|16SB|C|921
7AZS|1|16SB|G|922
7AZS|1|16SB|A|923
7AZS|1|16SB|C|924
7AZS|1|16SB|G|925

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S12B

30S ribosomal protein S12

Chain S17B

30S ribosomal protein S17