IL_7AZS_089

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

7AZS|1|16SB|A|1294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_089 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.1159

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7AZS|1|16SB|G|1291
7AZS|1|16SB|A|1292
7AZS|1|16SB|G|1293
7AZS|1|16SB|A|1294
7AZS|1|16SB|G|1295
*
7AZS|1|16SB|U|1369
7AZS|1|16SB|G|1370
7AZS|1|16SB|G|1371
7AZS|1|16SB|U|1372

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S15B

30S ribosomal protein S15

Chain S18B

30S ribosomal protein S18

Chain S6B

30S ribosomal protein S6