IL_7AZS_264

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

7AZS|1|23SB|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_264 not in the Motif Atlas

Geometric match to IL_5J7L_282

Geometric discrepancy: 0.1345

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

7AZS|1|23SB|G|1079
7AZS|1|23SB|A|1080
7AZS|1|23SB|U|1081
7AZS|1|23SB|G|1082
*
7AZS|1|23SB|C|1169
7AZS|1|23SB|G|1170
7AZS|1|23SB|C|1171

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L16B

50S ribosomal protein L16

Chain L6B

50S ribosomal protein L6