3D structure

PDB id
7B5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
AA*UACU
Length
6 nucleotides
Bulged bases
7B5K|1|A|A|2439
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7B5K_080 not in the Motif Atlas
Homologous match to IL_7A0S_076
Geometric discrepancy: 0.1009
The information below is about IL_7A0S_076
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_51454.3
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
45

Unit IDs

7B5K|1|A|A|2070
7B5K|1|A|A|2071
*
7B5K|1|A|U|2438
7B5K|1|A|A|2439
7B5K|1|A|C|2440
7B5K|1|A|U|2441

Current chains

Chain A
23S rRNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain v
ermC Nacent chain
Chain x
Transfer RNA; tRNA

Coloring options:


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