IL_7B5K_102

3D structure

PDB id

7B5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

7B5K|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B5K_102 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.095

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

7B5K|1|A|C|2636
7B5K|1|A|U|2637
7B5K|1|A|G|2638
7B5K|1|A|A|2639
7B5K|1|A|G|2640
*
7B5K|1|A|C|2774
7B5K|1|A|G|2775
7B5K|1|A|A|2776
7B5K|1|A|G|2777
7B5K|1|A|A|2778
7B5K|1|A|U|2779
7B5K|1|A|G|2780
7B5K|1|A|A|2781
7B5K|1|A|G|2782

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13