IL_7B5K_173

3D structure

PDB id

7B5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B5K_173 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.0884

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7B5K|1|a|C|1303
7B5K|1|a|G|1304
7B5K|1|a|G|1305
7B5K|1|a|A|1306
7B5K|1|a|U|1307
7B5K|1|a|U|1308
*
7B5K|1|a|A|1329
7B5K|1|a|U|1330
7B5K|1|a|G|1331
7B5K|1|a|A|1332
7B5K|1|a|A|1333
7B5K|1|a|G|1334

Current chains

Chain a

16S rRNA

Nearby chains

Chain m

30S ribosomal protein S13