3D structure

PDB id
7B5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CGGAUU*AUGAAG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7B5K_173 not in the Motif Atlas
Homologous match to IL_4LFB_055
Geometric discrepancy: 0.0884
The information below is about IL_4LFB_055
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_85536.2
Basepair signature
cWW-tSH-L-R-tHS-cWW-cWW
Number of instances in this motif group
8

Unit IDs

7B5K|1|a|C|1303
7B5K|1|a|G|1304
7B5K|1|a|G|1305
7B5K|1|a|A|1306
7B5K|1|a|U|1307
7B5K|1|a|U|1308
*
7B5K|1|a|A|1329
7B5K|1|a|U|1330
7B5K|1|a|G|1331
7B5K|1|a|A|1332
7B5K|1|a|A|1333
7B5K|1|a|G|1334

Current chains

Chain a
16S rRNA

Nearby chains

Chain m
30S ribosomal protein S13

Coloring options:


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