3D structure

PDB id
7B7D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GUGCCAG*CGGUAAUUC
Length
16 nucleotides
Bulged bases
7B7D|1|2|A|579, 7B7D|1|2|U|581, 7B7D|1|2|U|582
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7B7D_033 not in the Motif Atlas
Homologous match to IL_4V88_415
Geometric discrepancy: 0.196
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

7B7D|1|2|G|562
7B7D|1|2|U|563
7B7D|1|2|G|564
7B7D|1|2|C|565
7B7D|1|2|C|566
7B7D|1|2|A|567
7B7D|1|2|G|568
*
7B7D|1|2|C|575
7B7D|1|2|G|576
7B7D|1|2|G|577
7B7D|1|2|U|578
7B7D|1|2|A|579
7B7D|1|2|A|580
7B7D|1|2|U|581
7B7D|1|2|U|582
7B7D|1|2|C|583

Current chains

Chain 2
18S rRNA

Nearby chains

Chain 1
mRNA
Chain A
40S ribosomal protein S3
Chain Sm
Transfer RNA; tRNA
Chain c
40S ribosomal protein S23-A
Chain g
40S ribosomal protein S30-A

Coloring options:


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