IL_7B7D_034

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

7B7D|1|2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_034 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1622

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

7B7D|1|2|G|616
7B7D|1|2|U|617
7B7D|1|2|U|618
7B7D|1|2|A|619
7B7D|1|2|A|620
7B7D|1|2|A|621
7B7D|1|2|A|622
*
7B7D|1|2|U|1104
7B7D|1|2|C|1105

Current chains

Chain 2

18S rRNA

Nearby chains

Chain c

40S ribosomal protein S23-A

Chain e

40S ribosomal protein S26-B