IL_7B7D_077

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_077 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1295

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7B7D|1|2|G|1540
7B7D|1|2|G|1541
7B7D|1|2|G|1542
7B7D|1|2|A|1543
7B7D|1|2|U|1544
7B7D|1|2|A|1545
*
7B7D|1|2|U|1566
7B7D|1|2|U|1567
7B7D|1|2|C|1568
7B7D|1|2|A|1569
7B7D|1|2|A|1570
7B7D|1|2|C|1571

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

40S ribosomal protein S18-A

Chain I

40S ribosomal protein S19-A

Chain K

40S ribosomal protein S25-A