IL_7B7D_150

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_150 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0823

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7B7D|1|LA|G|1444
7B7D|1|LA|U|1445
7B7D|1|LA|A|1446
7B7D|1|LA|G|1447
7B7D|1|LA|U|1448
7B7D|1|LA|A|1449
7B7D|1|LA|G|1450
*
7B7D|1|LA|C|2354
7B7D|1|LA|G|2355
7B7D|1|LA|A|2356
7B7D|1|LA|A|2357
7B7D|1|LA|A|2358
7B7D|1|LA|C|2359

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LC

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

60S ribosomal protein L4-A

Chain LR

60S ribosomal protein L17-A