IL_7B7D_159

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_159 not in the Motif Atlas

Geometric match to IL_5TBW_067

Geometric discrepancy: 0.1311

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7B7D|1|LA|U|1645
7B7D|1|LA|G|1646
7B7D|1|LA|A|1647
7B7D|1|LA|A|1648
7B7D|1|LA|U|1649
*
7B7D|1|LA|A|1806
7B7D|1|LA|G|1807
7B7D|1|LA|G|1808
7B7D|1|LA|A|1809
7B7D|1|LA|A|1810

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LD

60S ribosomal protein L2-A

Chain LV

60S ribosomal protein L27-A

Chain Lc

60S ribosomal protein L34-A