IL_7B7D_166

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AAUAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_166 not in the Motif Atlas

Homologous match to IL_8C3A_080

Geometric discrepancy: 0.0908

The information below is about IL_8C3A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

7B7D|1|LA|A|1883
7B7D|1|LA|A|1884
7B7D|1|LA|U|1885
7B7D|1|LA|A|1886
7B7D|1|LA|A|1887
7B7D|1|LA|U|1888
7B7D|1|LA|G|1889
*
7B7D|1|LA|C|2346
7B7D|1|LA|U|2347
7B7D|1|LA|A|2348
7B7D|1|LA|U|2349

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LR

60S ribosomal protein L17-A

Chain LZ

60S ribosomal protein L31-A