IL_7B7D_187

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACAUA*UAUAGU

Length

11 nucleotides

Bulged bases

7B7D|1|LA|A|2502

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_187 not in the Motif Atlas

Geometric match to IL_4WF9_084

Geometric discrepancy: 0.3999

The information below is about IL_4WF9_084

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

7B7D|1|LA|A|2443
7B7D|1|LA|C|2444
7B7D|1|LA|A|2445
7B7D|1|LA|U|2446
7B7D|1|LA|A|2447
*
7B7D|1|LA|U|2499
7B7D|1|LA|A|2500
7B7D|1|LA|U|2501
7B7D|1|LA|A|2502
7B7D|1|LA|G|2503
7B7D|1|LA|U|2504

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LJ

60S ribosomal protein L8-A

Chain Le

60S ribosomal protein L36-A