IL_7B7D_208

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

7B7D|1|LA|A|3142, 7B7D|1|LA|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_208 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.1007

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7B7D|1|LA|C|3004
7B7D|1|LA|A|3005
7B7D|1|LA|A|3006
7B7D|1|LA|U|3007
*
7B7D|1|LA|A|3139
7B7D|1|LA|G|3140
7B7D|1|LA|A|3141
7B7D|1|LA|A|3142
7B7D|1|LA|C|3143
7B7D|1|LA|G|3144

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LQ

60S ribosomal protein L16-A