IL_7B7D_226

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

7B7D|1|LA|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_226 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.077

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7B7D|1|LA|G|3328
7B7D|1|LA|U|3329
7B7D|1|LA|A|3330
*
7B7D|1|LA|U|3373
7B7D|1|LA|U|3374
7B7D|1|LA|A|3375
7B7D|1|LA|A|3376
7B7D|1|LA|G|3377
7B7D|1|LA|C|3378

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LS

60S ribosomal protein L24-A

Chain LZ

60S ribosomal protein L31-A