IL_7BGD_032

3D structure

PDB id

7BGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUAG*CGCAGAGA

Length

13 nucleotides

Bulged bases

7BGD|1|a|A|710

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BGD_032 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1465

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

7BGD|1|a|U|692
7BGD|1|a|G|693
7BGD|1|a|U|694
7BGD|1|a|A|695
7BGD|1|a|G|696
*
7BGD|1|a|C|707
7BGD|1|a|G|708
7BGD|1|a|C|709
7BGD|1|a|A|710
7BGD|1|a|G|711
7BGD|1|a|A|712
7BGD|1|a|G|713
7BGD|1|a|A|714

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain k

30S ribosomal protein S11