IL_7BGE_019

3D structure

PDB id

7BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (head only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BGE_019 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1539

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.3

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7BGE|1|a|C|1314
7BGE|1|a|G|1315
7BGE|1|a|G|1316
7BGE|1|a|A|1317
7BGE|1|a|U|1318
7BGE|1|a|U|1319
*
7BGE|1|a|A|1340
7BGE|1|a|U|1341
7BGE|1|a|G|1342
7BGE|1|a|A|1343
7BGE|1|a|A|1344
7BGE|1|a|G|1345

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13