IL_7BHP_019

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCGC*GUC

Length

7 nucleotides

Bulged bases

7BHP|1|L5|C|449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BHP_019 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.2212

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

7BHP|1|L5|G|448
7BHP|1|L5|C|449
7BHP|1|L5|G|450
7BHP|1|L5|C|451
*
7BHP|1|L5|G|1296
7BHP|1|L5|U|1297
7BHP|1|L5|C|1298

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a