IL_7BHP_068

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGCC*GAUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BHP_068 not in the Motif Atlas

Geometric match to IL_4V88_461

Geometric discrepancy: 0.3493

The information below is about IL_4V88_461

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

7BHP|1|L5|G|1760
7BHP|1|L5|G|1761
7BHP|1|L5|C|1762
7BHP|1|L5|C|1763
*
7BHP|1|L5|G|1769
7BHP|1|L5|A|1770
7BHP|1|L5|U|1771
7BHP|1|L5|C|1772

Current chains

Chain L5

28S ribosomal RNA

Nearby chains